The first mitochondrial control region dataset : critically endangered freshwater turtles in Malaysia, Orlitia borneensis and Batagur borneoensis
- Mohd. Hairul Mohd. Salleh, Yuzine Esa, Nur Amalina Mohd. Izam, Amir Asyraf Zainudin, Khairul Azhar Romli, Wan Nur Fatin Syafiqah Wan Nawang, Athirah Mohd. Bakri, Nor Jasmin Hussin, Siti Amalia Aisyah Abdul Halim
- Creator: Mohd. Hairul Mohd. Salleh , Yuzine Esa , Nur Amalina Mohd. Izam , Amir Asyraf Zainudin , Khairul Azhar Romli , Wan Nur Fatin Syafiqah Wan Nawang , Athirah Mohd. Bakri , Nor Jasmin Hussin , Siti Amalia Aisyah Abdul Halim
- Date: 2023-08
- Language: ENG
- Type: Journal Article
- Identifier: vital:156484 , ISSN 1823-626X , valet-20240319-110755
- Full Text: false
- Description: The Malaysian Giant Turtles and Painted Terrapin mitochondrial control region has the first data deposited to the GenBank database. This dataset describes phylogenetic tree relationships between the genera Orlitia and Batagur. Orlitia borneensis and Batagur borneoensis are freshwater turtles listed as critically endangered on the International Union for Conservation of Nature (IUCN) Red List and among 24 species of turtles in Malaysia. Since both species are critically endangered, the data provided here can be used for future conservation genetics studies in order to protect the species from being driven to extinction. A sample of each species was collected aseptically from adult O. borneensis (male) and B. borneoensis (female) in captivity at Bukit Paloh, Kuala Berang, Terengganu. The data for this study can be found in the GenBank database with accession numbers OQ571740 and OQ571740.
- Creator: Mohd. Hairul Mohd. Salleh , Yuzine Esa , Nur Amalina Mohd. Izam , Amir Asyraf Zainudin , Khairul Azhar Romli , Wan Nur Fatin Syafiqah Wan Nawang , Athirah Mohd. Bakri , Nor Jasmin Hussin , Siti Amalia Aisyah Abdul Halim
- Date: 2023-08
- Language: ENG
- Type: Journal Article
- Identifier: vital:156484 , ISSN 1823-626X , valet-20240319-110755
- Full Text: false
- Description: The Malaysian Giant Turtles and Painted Terrapin mitochondrial control region has the first data deposited to the GenBank database. This dataset describes phylogenetic tree relationships between the genera Orlitia and Batagur. Orlitia borneensis and Batagur borneoensis are freshwater turtles listed as critically endangered on the International Union for Conservation of Nature (IUCN) Red List and among 24 species of turtles in Malaysia. Since both species are critically endangered, the data provided here can be used for future conservation genetics studies in order to protect the species from being driven to extinction. A sample of each species was collected aseptically from adult O. borneensis (male) and B. borneoensis (female) in captivity at Bukit Paloh, Kuala Berang, Terengganu. The data for this study can be found in the GenBank database with accession numbers OQ571740 and OQ571740.
The first next-generation sequencing metabarcoding dataset on faecal bacterial diversity from the Southern River terrapin, Batagur affinis ssp.
- Mohd. Hairul Mohd. Salleh, Yuzine Esa
- Creator: Mohd. Hairul Mohd. Salleh , Yuzine Esa
- Date: 2023-02
- Language: ENG
- Type: Journal Article
- Identifier: vital:156137 , ISSN 1823-626X , valet-20240229-094946
- Full Text: false
- Description: The Southern River terrapin, Batagur affinis ssp., has the first data on faecal bacterial diversity from next-generation sequencing (NGS). This dataset describes the bacterial diversity of the Southern River terrapin, locally known as Tuntung. Batagur affinis spp. are freshwater turtles listed as critically endangered on the International Union for Conservation of Nature (IUCN) Red List since 2000. This is the first dataset on the faecal bacterial diversity of Batagur affinis ssp., and the data provided here can be used to comprehensively understand the microbiome's community composition. Seven faeces samples were collected aseptically from captive (N = 5) and wild (N = 2) adult B. affinis ssp. while crossing Peninsular Malaysia's east and west coasts. The data was acquired by metabarcoding using 16S rRNA. The amplicons were further analysed using the SILVA and DADA2 pipelines. The V3-V4 of the 16S rRNA gene region was amplified, and the amplicons were sequenced on the Illumina MiSeq system. In total, 297 bacterial communities' taxonomic profiles (phylum to genus) have been determined. The data for this metagenome can be found in the BioSample Submission Portal as Bio-Project PRJNA767629 and Sequence Read Archive (SRA) accession numbers from SAMN21919713 to SAMN21919722.
- Creator: Mohd. Hairul Mohd. Salleh , Yuzine Esa
- Date: 2023-02
- Language: ENG
- Type: Journal Article
- Identifier: vital:156137 , ISSN 1823-626X , valet-20240229-094946
- Full Text: false
- Description: The Southern River terrapin, Batagur affinis ssp., has the first data on faecal bacterial diversity from next-generation sequencing (NGS). This dataset describes the bacterial diversity of the Southern River terrapin, locally known as Tuntung. Batagur affinis spp. are freshwater turtles listed as critically endangered on the International Union for Conservation of Nature (IUCN) Red List since 2000. This is the first dataset on the faecal bacterial diversity of Batagur affinis ssp., and the data provided here can be used to comprehensively understand the microbiome's community composition. Seven faeces samples were collected aseptically from captive (N = 5) and wild (N = 2) adult B. affinis ssp. while crossing Peninsular Malaysia's east and west coasts. The data was acquired by metabarcoding using 16S rRNA. The amplicons were further analysed using the SILVA and DADA2 pipelines. The V3-V4 of the 16S rRNA gene region was amplified, and the amplicons were sequenced on the Illumina MiSeq system. In total, 297 bacterial communities' taxonomic profiles (phylum to genus) have been determined. The data for this metagenome can be found in the BioSample Submission Portal as Bio-Project PRJNA767629 and Sequence Read Archive (SRA) accession numbers from SAMN21919713 to SAMN21919722.
Species identification and relationship of sea cucumber species from Pulau Tinggi and Sedili Kechil, Johor based on ossicle shape
- Nursyamfarhani Akashah, Kamarul Rahim Kamarudin, Nur Sabrina Badrulhisham, Muhammad Abdul Latiff Abu Bakar, Muhammad Idham Legiman, Aisyah Mohamed Rehan, Faezah Mohd. Salleh, Yuzine Esa, Siti Najihah Solehin, Nor Shahida Ab. Rahman, Ummi Nurain Akma, Farhanah Shahdan, Hanis Azman, Siti Nursyuhada Mohd. Fadzil, Nurin Husnina Mohd. Faid, Noor Syazwani Shahrul Zaman
- Creator: Nursyamfarhani Akashah , Kamarul Rahim Kamarudin , Nur Sabrina Badrulhisham , Muhammad Abdul Latiff Abu Bakar , Muhammad Idham Legiman , Aisyah Mohamed Rehan , Faezah Mohd. Salleh , Yuzine Esa , Siti Najihah Solehin , Nor Shahida Ab. Rahman , Ummi Nurain Akma , Farhanah Shahdan , Hanis Azman , Siti Nursyuhada Mohd. Fadzil , Nurin Husnina Mohd. Faid , Noor Syazwani Shahrul Zaman
- Date: 2021
- Subjects: Science -- Science (General)
- Language: ENG
- Type: Journal Article
- Identifier: vital:149488 , ISSN 2716-7143 , valet-20221208-131653
- Full Text: false
- Description: Sea cucumbers are an abundant echinoderm group in Malaysia which provides commercial and medicinal values to local people. Due to the lack of data on sea cucumbers status in Johor coastal seawaters, this study was conducted. This study aimed to identify the species and relationship of sea cucumber from two selected Johor coastal seawater; Pulau Tinggi and Sedili Kechil based on ossicle shape. The current study recorded 53 individuals of sea cucumbers, of which 23 individuals were from Pulau Tinggi, Mersing District and 30 individuals were from Sedili Kechil, Kota Tinggi District. A number of 10 species of sea cucumber were found in the coastal waters of Pulau Tinggi, Mersing and three species in Sedili Kechil, Kota Tinggi, Johor. A total of 10 ossicle shapes were observed and extracted from the sea cucumber samples namely button, perforated plate, table, C-shaped rod, rosette, anchor, spider, I-shaped rod, boomerang, and J-shaped rod. The species relationship based on ossicle shapes was analysed using clustering option of PAST (PAleontological STatistics) software version 4.03. The analysis concluded that two groups of sea cucumber families i.e. Holothuriidae and Stichopodidae were present, although S. chloronotus clustered closer with the members of family Holothuriidae. Although more specimens are required to generate better conclusive results, the outcomes provided updated data on sea cucumber species in Johor seawater.
- Creator: Nursyamfarhani Akashah , Kamarul Rahim Kamarudin , Nur Sabrina Badrulhisham , Muhammad Abdul Latiff Abu Bakar , Muhammad Idham Legiman , Aisyah Mohamed Rehan , Faezah Mohd. Salleh , Yuzine Esa , Siti Najihah Solehin , Nor Shahida Ab. Rahman , Ummi Nurain Akma , Farhanah Shahdan , Hanis Azman , Siti Nursyuhada Mohd. Fadzil , Nurin Husnina Mohd. Faid , Noor Syazwani Shahrul Zaman
- Date: 2021
- Subjects: Science -- Science (General)
- Language: ENG
- Type: Journal Article
- Identifier: vital:149488 , ISSN 2716-7143 , valet-20221208-131653
- Full Text: false
- Description: Sea cucumbers are an abundant echinoderm group in Malaysia which provides commercial and medicinal values to local people. Due to the lack of data on sea cucumbers status in Johor coastal seawaters, this study was conducted. This study aimed to identify the species and relationship of sea cucumber from two selected Johor coastal seawater; Pulau Tinggi and Sedili Kechil based on ossicle shape. The current study recorded 53 individuals of sea cucumbers, of which 23 individuals were from Pulau Tinggi, Mersing District and 30 individuals were from Sedili Kechil, Kota Tinggi District. A number of 10 species of sea cucumber were found in the coastal waters of Pulau Tinggi, Mersing and three species in Sedili Kechil, Kota Tinggi, Johor. A total of 10 ossicle shapes were observed and extracted from the sea cucumber samples namely button, perforated plate, table, C-shaped rod, rosette, anchor, spider, I-shaped rod, boomerang, and J-shaped rod. The species relationship based on ossicle shapes was analysed using clustering option of PAST (PAleontological STatistics) software version 4.03. The analysis concluded that two groups of sea cucumber families i.e. Holothuriidae and Stichopodidae were present, although S. chloronotus clustered closer with the members of family Holothuriidae. Although more specimens are required to generate better conclusive results, the outcomes provided updated data on sea cucumber species in Johor seawater.
Phylogenetic relationships of fruit bats (Family: Pteropodidae) in Malaysia inferred from partial mtDNA cytochrome B gene
- Kho, Andy Han Guan, Yuzine Esa, Awang Ahmad Sallehin, Jeffrine Rovie Ryan, Ahmad Mashur Julaihi, Jayaraj Vijaya Kumaran, Mohd. Tajuddin Abdullah
- Creator: Kho, Andy Han Guan , Yuzine Esa , Awang Ahmad Sallehin , Jeffrine Rovie Ryan , Ahmad Mashur Julaihi , Jayaraj Vijaya Kumaran , Mohd. Tajuddin Abdullah
- Date: 2006-07-24 Event Start Date , 2006-07-25 Event End Date , 2006 Pub. date
- Subjects: Science
- Language: ENG
- Type: Conference Papers
- Identifier: valet-20170921-11005 , vital:103730
- Full Text: false
- Description: The taxonomic relationships of the Old World fruit bat family, Pteropodinae, by Anderson (1912) using morphological characters have been challenged by several authors. Previous studies using mitochondrial DNA (mtDNA) found major disagreement between morphology and molecular data in inferring the phylogeny of the fruit bats. Fifty-eight samples from 14 species of the Malaysian fruit bats (Family: Pteropodidae) was used in this study to examine on the phylogenogenetic relationship between species of fruit bats using 395 base pairs of partial mtDNA cytochrome b (cyt b) gene. Our phylogenetic analysis using neighbour-joining and maximum parsimony methods failed to support the monophyly of both the rousettine and cynopterine groups of the Subfamily Pteropodinae.
- Creator: Kho, Andy Han Guan , Yuzine Esa , Awang Ahmad Sallehin , Jeffrine Rovie Ryan , Ahmad Mashur Julaihi , Jayaraj Vijaya Kumaran , Mohd. Tajuddin Abdullah
- Date: 2006-07-24 Event Start Date , 2006-07-25 Event End Date , 2006 Pub. date
- Subjects: Science
- Language: ENG
- Type: Conference Papers
- Identifier: valet-20170921-11005 , vital:103730
- Full Text: false
- Description: The taxonomic relationships of the Old World fruit bat family, Pteropodinae, by Anderson (1912) using morphological characters have been challenged by several authors. Previous studies using mitochondrial DNA (mtDNA) found major disagreement between morphology and molecular data in inferring the phylogeny of the fruit bats. Fifty-eight samples from 14 species of the Malaysian fruit bats (Family: Pteropodidae) was used in this study to examine on the phylogenogenetic relationship between species of fruit bats using 395 base pairs of partial mtDNA cytochrome b (cyt b) gene. Our phylogenetic analysis using neighbour-joining and maximum parsimony methods failed to support the monophyly of both the rousettine and cynopterine groups of the Subfamily Pteropodinae.
- «
- ‹
- 1
- ›
- »